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  1. Alba, D.M. ; Marigó, J. ; Nacarino-Meneses, C. ; Villa, A. (Ed.)
    The end-Cretaceous mass extinction triggered the collapse of ecosystems and a drastic turnover in mammalian communities leading to the demise of many ecologically specialized species. While Mesozoic mammals were ecomorphologically diverse, recognizable ecological richness was only truly established in the Eocene. Questions remain about the ecology of the first wave of mammals radiating after the extinction. Here, we use the semicircular canals of the inner ear as a proxy for locomotor behavior. Thirty new inner ear virtual endocasts were generated using high-resolution computed tomography scanning. This sample was supplemented by data from the literature to construct a dataset of 79 fossils spanning the Jurassic to the Eocene alongside 262 extant mammals. Vestibular sensitivity was measured using the radius of curvature against body mass and the residuals of this relationship were analyzed. The petrosal lobule size relative to body mass were compared with the inner ear data as they have a role in maintaining gaze stabilization during motion. Paleocene mammals exhibited smaller canal radius of curvature, compared to Mesozoic, Eocene, and extant taxa. In the early Paleocene, canal radius and associated petrosal lobules were relatively smaller on average compared to other temporal groups, suggesting less ability for fast movements. 
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    Free, publicly-accessible full text available June 26, 2024
  2. The end-Cretaceous mass extinction, 66 million years ago, profoundly reshaped the biodiversity of our planet. After likely originating in the Cretaceous, placental mammals (species giving live birth to well-developed young) survived the extinction and quickly diversified in the ensuing Paleocene. Compared to Mesozoic species, extant placentals have advanced neurosensory abilities, enabled by a proportionally large brain with an expanded neocortex. This brain construction was acquired by the Eocene, but its origins, and how its evolution relates to extinction survivorship and recovery, are unclear, because little is known about the neurosensory systems of Paleocene species. We used high-resolution computed tomography (CT) scanning to build digital brain models in 29 extinct placentals (including 23 from the Paleocene). We added these to data from the literature to construct a database of 98 taxa, from the Jurassic to the Eocene, which we assessed in a phylogenetic context. We find that the Phylogenetic Encephalization Quotient (PEQ), a measure of relative brain size, increased in the Cretaceous along branches leading to Placentalia, but then decreased in Paleocene clades (taeniodonts,phenacodontids, pantodonts, periptychids, and arctocyonids). Later, during the Eocene, the PEQ increased independently in all crown groups (e.g., euarchontoglirans and laurasiatherians). The Paleocene decline in PEQ was driven by body mass increasing much more rapidly after the extinction than brain volume. The neocortex remained small, relative to the rest of the brain, in Paleocene taxa and expanded independently in Eocene crown groups. The relative size of the olfactory bulbs, however, remained relatively stable over time, except for a major decrease in Euarchontoglires and some Eocene artiodactyls, while the petrosal lobules (associated with eye movement coordination) decreased in size in Laurasiatheria but increased in Euarchontoglires. Our results indicate that an enlarged, modern-style brain was not instrumental to the survival of placental mammal ancestors at the end-Cretaceous, nor to their radiation in the Paleocene. Instead, opening of new ecological niches post-extinction promoted the diversification of larger body sizes, while brain and neocortex sizes lagged behind. The independent increase in PEQ in Eocene crown groups is related to the expansion of the neocortex, possibly a response to ecological specialization as environments changed, long after the extinction. 
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  3. Disordered binding regions (DBRs), which are embedded within intrinsically disordered proteins or regions (IDPs or IDRs), enable IDPs or IDRs to mediate multiple protein-protein interactions. DBR-protein complexes were collected from the Protein Data Bank for which two or more DBRs having different amino acid sequences bind to the same (100% sequence identical) globular protein partner, a type of interaction herein called many-to-one binding. Two distinct binding profiles were identified: independent and overlapping. For the overlapping binding profiles, the distinct DBRs interact by means of almost identical binding sites (herein called “similar”), or the binding sites contain both common and divergent interaction residues (herein called “intersecting”). Further analysis of the sequence and structural differences among these three groups indicate how IDP flexibility allows different segments to adjust to similar, intersecting, and independent binding pockets. 
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